Monthly Archives: September 2012

Smoothing out the Kinks

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How does science work? Though romanticized as a string of exciting, accidental discoveries, in reality, the bulk of scientific research happens in the prelude to discovery–the humbler, though no less exciting, process of troubleshooting. The first day of an expedition is typically the most hectic, as researchers settle into the rhythm of fieldwork, smoothing out the kinks along the way. The Surprise Valley team encountered its fair share of issues to troubleshoot today.  

Sierra taking off

The first day of the field season began at 6:30 AM this morning, with the team members loading the equipment and driving to nearby Cedarville Airport. There, they would send SIERRA, a small aircraft capable of flying without pilot or crew, known as an unmanned aerial system (UAS), on its first flight mission to collect magnetic data along a preprogrammed course using an instrument called a magnetometer. The team will use this data to map the underground faults and fractures in Surprise Valley, which may help circulate hot water and minerals throughout the numerous hot springs in the area. This information will be critical for predicting the likelihood of earthquakes in the region and the damage they may do, informing land and water use decisions, and tapping the hot spring fluids as an energy resource. 
When USGS arrived at the airport, SIERRA engineers and aircraft itself awaited them, as did Corey Ippolito and Ritchie Lee, both from NASA Ames Research Center, who developed the scientific instrumentation, or payload, which SIERRA uses to collect magnetic data. The team will integrate the payload into a new experimental UAS next year which can make higher-level cognitive assessments of the sensor data it receives, allowing it to plan and perform a complete survey mission without human intervention. The vehicle will adjust its flight path according to magnetic fields and environmental conditions in order to maximize data collection in areas of interest and reduce flight time over other areas. With a specified pre-programmed flight path that does not adapt to the magnetic environment, SIERRA could miss important features that will not be apparent until after the data is downloaded post-flight. The team will later compare the datasets collected by the two systems with the goal of developing a cheaper, more effective airborne survey system.

Both groups of engineers had already set up the ground base station, where they would communicate with SIERRA through signals relayed from the aircraft to their computers. At about 9:00 AM, SIERRA’s engine rumbled to life, its propeller whirring vigorously. Just as fast as it sped down the runway, it was aloft, disappearing into a tiny glint of sunlight above the hills along the eastern edge of the valley.  A pilot in a separate aircraft, the chase plane, took off after the SIERRA, which he would monitor throughout its flight per Federal Aviation Administration regulations. 

SIERRA began by flying north, south, east, and west in a box-shaped path. It then flew within the box, first undulating up and down, then banking to the left and right, in a flight sequence known as a compensation box. An instrument on SIERRA called a fluxgate magnetometer would provide information about the magnetic field at every possible position of the aircraft, known as compensation data. When the team performs a magnetic survey, they can subtract the appropriate magnetic field values based on SIERRA’s position at any given point in time. This would allow researchers to correct for variations in the magnetic field that can arise when SIERRA maneuvers, which could obscure signals generated by the geologic structures the scientists are interested in. Unlike the cesium magnetometer in the wingtip, which tells researchers only the strength of the field, the fluxgate also indicates the direction of the field, parsed into three different axes.

The aircraft then began a detailed survey, collecting magnetic field data along tightly spaced east-west lines from two of the three regions that Jonathan Glen of the U.S. Geological Survey (USGS) and Anne Egger of Central Washington University, the lead geoscientists on the project, had found magnetically interesting according to ground-based studies they performed during a previous visit to Surprise Valley. 

Corey and Ritchie at the ground-based stationLeft: Corey Ippolito, co-principal investigator on the Surprise Valley project and developer of the SIERRA payload system (front), with Ritchie Lee (rear), monitoring SIERRA’s flight parameter and magnetic data from the ground base station

Meanwhile, the SIERRA ground crew monitored how the aircraft moved through the air based on magnetic field direction data collected by another type of fluxgate magnetometer, relayed from an antenna installed on the aircraft’s underbelly. SIERRA also sent information on its flight parameters, such as its altitude, GPS coordinates, and speed. At the same time, the USGS and NASA engineers’ computers received the scientific data SIERRA collected in addition to flight parameter data, transmitted by an antenna on the nose of the aircraft.  Besides the compensation data, these include the magnetic field data measured by SIERRA’s magnetometer, as well as the UAS’ distance from the ground, collected by an instrument called a laser altimeter. Knowing SIERRA’s altitude will allow the team to correct for variations in magnetic field strength due merely to differences in distance from a magnetic source, since the strength of a magnetic field fades the further one moves away from the source. 

Out in the field, SIERRA relayed the same flight parameter and magnetic data it relayed to the science payload team to an ATV equipped with a computer, GPS, and a radio receiver. SIERRA transmits payload data to the radio receiver, which is then stored on a hard drive on the ATV. This ensures that the team has a backup in case the computer on board the SIERRA fails or the aircraft crashes. Since following SIERRA’s exact path is unfeasible on ATVs, a researcher in Jonathan’s  lab drove along a north-south path, perpendicular to SIERRA’s flight path, which allowed the ATV to remain within range of the aircraft at all times

Sierra landingAfter SIERRA landed, the wireless communication system that the payload engineers had set up to download flight parameter and magnetic data from SIERRA malfunctioned. In the past they had discussed transferring data directly from SIERRA through a network cable, although in the end they opted to use a commercial off-the-shelf (COTS) wireless system, or a wireless system available for sale to the general public. COTS products are designed to be easily implemented into existing systems without the need for customization. With the wireless system, the engineers could avoid directly accessing the aircraft’s sensitive instruments. However, the COTS system was not able to withstand SIERRA’s vibrations during the flight test.  With the wireless system down, the payload team developed a workaround that requires the aircraft to be physically tethered to the ground station to download the data after each flight.

Meanwhile, the compensation data from SIERRA’s fluxgate magnetometer yielded highly unusual results. The data from a test of the fluxgate when it was first installed looked reasonable to the team, with variations not too far from expected values. They did notice some anomalies, which they believed they could solve only by recalibrating the instrument or remounting it away from magnetic noise, signals from magnetic sources that may distort the magnetometer’s measurements, called magnetic noise. Currently the fluxgate sits beneath the wing, not at the tip, but toward the center of the aircraft, which houses numerous electronics. Both recalibrating and repositioning the fluxgate would be prohibitively expensive.  Instead, the researchers decided to use the instrument as it was calibrated. The compensation still corrected for SIERRA’s magnetic field, but not as precisely as it should. The researchers hoped that the remoteness of Surprise Valley, away from steel-framed buildings, electric lines, and other magnetic sources would enable them to make minor adjustments to correct for aircraft-related noise. 
The team troubleshooting the wireless systemLeft: Project co-principal investigator Jonathan Glen  (lower left) with NASA and Geometrics engineers, troubleshooting SIERRA’s malfunctioned wireless system, which prevented the USGS and payload systems engineers from remotely downloading flight parameter and magnetic data to their ground base station computers

At the end of the day, the payload systems engineers hauled the base station computers to the USGS group’s house, where they spent hours poring over the compensation data, trying to pinpoint the source of the anomalies.  Then an idea occurred to the team: maybe the problem was limited only to the fluxgate and not dependent on the aircraft, which they could confirm by examining just the fluxgate in the house, where magnetic noise is minimal. If working properly, the fluxgate’s measurements should closely reflect the Earth’s magnetic field, a known value. If they don’t, then the problem must be due to the fluxgate itself.  

Jonathan and Corey called SIERRA lead engineer Randy Berthold to ask if one of the SIERRA engineers could remove the fluxgate magnetometer from the aircraft so that they could run the test on the software and hardware in isolation. Once Randy agreed to meet them at the Cedarville Airport in a few minutes, past eight at night, Jonathan, Corey, Ritchie, and Geometrics engineer Misha Tchernychev bolted out of the house, jumped into one of the trucks, and sped to the airport. There, Randy and another SIERRA engineer, Ric Kolyer removed the fluxgate, which the USGS, NASA, and Geometrics crew then took home for a long night of troubleshooting. 

Troubleshooting the fluxgate magnetometer
Right: Corey (left) and Ritchie (right) troubleshooting the fluxgate magnetometer.

Team members camped out with the fluxgate in the dining room, exhausted yet still talking and joking animatedly between swills of coffee.   After a few hours, the team discovered that the fluxgate could collect data in two modes—calibrated or raw. The fluxgate was currently, as during the flight, in calibrated mode. When they team took measurements in this mode, they saw magnetic field values far from those of the Earth. When they switched the instrument to raw mode, they saw the values they expected. Clearly the fluxgate’s calibration needed fixing. 
Tomorrow morning, the crew will try to determine the correct calibration themselves by moving the fluxgate through different maneuvers, which will yield the mathematical relationship between the raw and improperly calibrated versions of the data, allowing them to convert today’s data to raw data. They hope that a technician from Applied Physics, the manufacturer of the fluxgate, during tomorrow’s Labor Day holiday, in which case they can provide the proper calibration, another equation that the team can apply to the raw data from today to generate properly calibrated results. Otherwise, the team can calculate the correct calibration themselves based on the readings from the fluxgate maneuvers. Ideally, the technician may even be able to drive a new instrument up from the Bay Area so that the team can avoid having to undo and redo the calibration for each dataset.  

“Field work can be very stressful,” said Jonathan. “It requires a certain kind of temperament. I’ve learned to live on very little sleep.” He paused, then grinned. “But that’s the best part of fieldwork.  I’m so thrilled to get to work with Corey and Ritchie.  They’re really great…. We’re really privileged to be able to do the work we do.” What he said was true, even when “the work” is troubleshooting. Imagine how much more so on a day of smooth operation.   

On this blog, also hosted at USGS’ website and Scientific American’s Expeditions we’ll share updates on daily missions, glimpses of life in the field, and profiles of individual team members. We’re excited that you’ll be joining us!


All photos by Melissa Pandika.  You can follow the Surprise Valley team on Twitter @SV_UAS, and view more photos of the team in action on their Flickr photostream.


About the Author: Melissa Pandika is a journalism master’s student at Stanford University.  Previously, she studied molecular and cell biology at the University of California, Berkeley and investigated how highly aggressive brain tumors evade therapies that block blood vessel growth at the University of California, San Francisco. You can follow her on Twitter @mmpandika.

Introduction: Mapping Underground Faults and Fractures in Surprise Valley

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Tucked in the northeastern corner of California, Surprise Valley is a quiet rural community of about 1,000, set amidst a vast high desert landscape dotted with hot springs and dry lakebeds. But there’s far more going on below the ground than you’d ever know, standing above. From September 1-13, a team of scientists and engineers will collect magnetic data using ground surveys and an aircraft that can fly without a pilot or crew on board, called an unmanned aerial system, or UAS, to map the geophysics below the surface of Surprise Valley.


Why create such a map when hints of the area’s seismic history are plainly displayed on its surface? The corrugated Surprise Valley Fault snakes 85 kilometers along the Warner Mountain Range, the landscape is pocked with smaller surface scars, called fault scarps, that indicate movement along faults, and hot springs billow steam–proof that the area is anything but quiet.





The Sensor Integrated Environmental Remote Research Aircraft, or SIERRA, one of the unmanned aerial systems (UAS) that the research team will use to collect magnetic data from Surprise Valley 



But although some faults and fractures are visible on the surface, some remain completely hidden underground. And even if researchers know where the hot springs are located, they want to understand how hot spring fluids flow through the network of pores and channels underground. Investigating this geothermal fluid circulation system includes identifying faults below the surface that might conduct the hot mixture of fluids and minerals found in the hot springs. These faults also have the potential to rupture during an earthquake, and the detailed studies will help refine predictions of how likely and how damaging earthquakes could be in the region.


Later, the team will compare magnetic data to topographic data they’ve already collected in order to correlate subsurface structures to areas of surface offset, or displacement from the fault center, which indicate active faulting. At the end of the U.S. Geological Survey (USGS)-led, NASA-funded project, which includes a second field session scheduled for next year, they’ll produce a 3-D map that will provide geophysical data on Surprise Valley at a level of detail yet to be achieved for the area. This map will be crucial for predicting the likelihood of earthquakes in Surprise Valley and the damage they may do. The Surprise Valley municipal government can also use the map to inform land and water use decisions, since toxic water zones have been identified in the area, as well to help tap the geothermal system as a sustainable energy source.  


The team, which includes scientists and engineers from USGS, NASA-Ames, Central Washington University, and Carnegie Mellon University, will measure magnetic fields using ground surveys and an unmanned aerial system (UAS) to map the geophysics below the surface of Surprise Valley.  Over the years, they’ve collected a wealth of magnetic data by foot and small, four-wheel all-terrain vehicles, or ATV. But the areas they can safely and feasibly survey on the ground are limited. They can’t walk through private lands, dense vegetation, or hot springs, for example. Geoscientists have typically addressed this challenge by contracting pilots to collect data along a specified flight path. Not only are these manned aerial surveys costly, they require pilots to fly at dangerously low altitudes. That’s why the Surprise Valley team will collect data with a small, lightweight, low-flying UAS known as SIERRA (Sensor Integrated Environmental Remote Research Aircraft). While flying along a preprogrammed path, the NASA-developed SIERRA will relay the data collected by a magnetometer in its wing to a ground station computer. SIERRA is available for other research projects involving the collection of data from inaccessible swaths of land.  Scientists have already employed SIERRA in the NASA-funded Characterization of Arctic Sea Ice Experiment (CASIE) to assess the decline in the ice covering Alaska’s Beaufort Sea.


While SIERRA offers a safer alternative to manned flight, it still has some limitations. With a specified flight path, both manned aerial surveys and UAS run the risk of bypassing interesting geological features. Next year, the Surprise Valley team will collect magnetic data using NASA’s Swift “smart” UAS. The major difference between the two platforms is that an on-board system navigates Swift based on feedback it receives on both magnetic data and environmental conditions, such as wind speed and direction, or obstacles in its path. The system, known as an adaptive payload system, will integrate the magnetic data that Swift’s magnetometer has collected with magnetic datasets into an algorithm that will then “decide” how to adjust Swift’s flight path to maximize data collection in areas of interest.  The team will compare the datasets collected by the two UAS platforms with the goal of developing a cheaper, more effective airborne survey system.






The team preparing to test the all-terrain vehicles (ATVs), with the Swift UAS in the background



This field season, the team will run additional tests on SIERRA’s ability to correct for magnetic noise associated with the magnetization of the aircraft that would otherwise obscure signals arising from geologic structures we’re interested in. Faults and fractures generate magnetic fields that deviate from those emitted by regions of the valley that lack these features, but so do the aircraft and its maneuvers. SIERRA needs to subtract these readings to ensure that any anomalies that appear in the magnetic data reflect solely features below the surface. 


The researchers will then fly the aircraft in a broad zigzag pattern across Surprise Valley, collecting magnetic data from large features in previously unexplored areas. These data will be important in planning next year’s mission, when Swift will conduct more detailed surveys of the region. The team will concurrently test the payload system by comparing these data against the data collected by Swift.






Team members testing the ground base station systems. These include: the differential GPS, which will enhance the accuracy of the GPS readings of SIERRA’s location (left); the antenna that will relay information from SIERRA’s on board radio about the aircraft’s mechanical status and location (right); and the ground magnetometer (not shown), which measures the daily temporal variations in the Earth’s magnetic field due to fluctuations in the upper atmosphere. Researchers will subtract ground and airborne magnetometer data to correct for these daily variations and reveal the signals due to the faults and fractures they want to map.



While airborne magnetic surveys offer complete coverage of an area, there are still reasons to do ground-based surveys. Since a magnetic field weakens with increased distance from the magnetic source, aerial surveys can only detect large fields produced by the gross characteristics of a source below the surface. On the ground, researchers are able to pick up on the more subtle fields produced by a source’s smaller features. During both field sessions, the team will continue to collect magnetic data by foot and ATV in addition to UAS and will perform gravity measurements along some of the same subsurface structures.  They’ll also drill rock cores to measure remnant magnetization, a record of the magnetic fields at the time the rocks formed, and collect samples from the area to determine density and magnetic susceptibility, which is a measure of how “magnetizable” a rock is. These data will collectively be used to develop gravity and magnetic models to determine the geometry of structures below the surface.


The National Center for Airborne Laser Mapping has already mapped Surprise Valley’s surface features, or topography, using airborne lidar, a highly sensitive technology that can make out even tiny features—visualizing objects and distances as small as a few centimeters. Lidar bounces a laser off the landscape, making a detailed 3-D topographical image. Unlike magnetic field data, which can identify structures below the surface but tells us nothing about their activity, lidar can distinguish active from inactive structures, since only structures that have been active in the recent past produce fault scarps and other areas of surface offset that would still be visible. Otherwise, erosion and sedimentation would have wiped them out. After tying surface offset to subsurface structures, scientists can develop models for the area’s seismic activity.


On this blog, also hosted at USGS’ website and Scientific American’s Expeditions we’ll share updates on daily missions, glimpses of life in the field, and profiles of individual team members. We’re excited that you’ll be joining us!


All photos by Melissa Pandika.  You can follow the Surprise Valley team on Twitter @SV_UAS, and view more photos of the team in action on their Flickr photostream.


About the Author: Melissa Pandika is a journalism master’s student at Stanford University.  Previously, she studied molecular and cell biology at the University of California, Berkeley and investigated how highly aggressive brain tumors evade therapies that block blood vessel growth at the University of California, San Francisco. You can follow her on Twitter @mmpandika.